DIY / Local Processing

For users who prefer to process data on a local machine rather than the Latch cloud, ATX provides open-source tools that mirror the cloud Workflows.

Tools

Tool	Repository	Purpose
ATX_epigenomics	atlasxomics/ATX_epigenomics	Local epigenomics preprocessing / analysis.
Barcode QC CLI	atlasxomics/barcodeqc	Local barcode quality control (the CLI form of BarcodeQC).

Installation and step-by-step run instructions live in each tool's repository README. (Detailed local-run walkthroughs to be added here.)